Iiserpune.ac.in

List of Publications 2010
(Publications with a * at the end are either published from IISER Pune or have IISER Pune affiliations mentioned in the paper) 1. S. S. Roy, T.S. Mahesh, Density matrix tomography of singlet states, J. Magn. Reson, 2010, 206, 127.*
2. S.S.Roy, T. S. Mahesh, Initialization of NMR Quantum Registers using Long-Lived Singlet States, Phys. Rev. A, 2010, 82, 52302.*
3. A. M. Kalle, A. Mallika, J. Badiger, Alinakhi, P. Talukdar, Sachchidanand, Inhibition of SIRT1 by a small molecule induces apoptosis in breast cancer cells.
Biochemical and Biophysical Research Communications 2010, 401, 13-19.*
4. R. Pallavi, N. Roy, R. K. Nageshan, P. Talukdar, S. R. Pavithra, R. Reddy, S. Venketesh, R. K. Goel, A. K. Gupta, R. K. Singh, S. C. Yadav, U. Tatu* Heat
shock protein 90 as a drug target against protozoan infections: Biochemical
characterization of Hsp90 from Plasmodium falciparum, Trypanosoma evansi
and evaluation of its inhibitor as a candidate drug. J. Biol. Chem. 2010 (in press).
5. R. Devanathan, A. Venkatnathan*, R. Rousseau, M. Dupuis, T. Frigato, W. Gu and V. Helms, Atomistic simulation of water percolation and proton hopping in Nafion
fuel cell membrane, J. Phys. Chem. B, 2010, 114, 13681.*
6. E Alleno, S. Singh, S. K. Dhar, G. André, Interplay between magnetism and superconductivity in HoNi2B2C revisited, New J. Phys., 2010, 12, 43018.
7. R. Klingeler, N. Leps, I. Hellmann, A. Popa, U. Stockert, C. Hess, V. Kataev, H.-J. Grafe, F. Hammerath, G. Lang, S. Wurmehl, G. Behr, L. Harnagea, S. Singh,
and B. Büchner, Local antiferromagnetic correlations in the iron pnictide
superconductors LaFeAsO1−xFx and Ca(Fe1−xCox)2As2 as seen via normal-state
susceptibility, Phys. Rev. B, 2010, 81, 024506.*
8. K. Pramanik, L. Harnagea, S. Singh, S. Aswartham, G. Behr, S. Wurmehl, C. Hess, R. Klingeler, and B. Büchner, Critical current and vortex dynamics in
single crystals of Ca(Fe1−xCox)2As2, Phys. Rev. B, 2010, 82, 014503*
9. S. Aswartham, C. Nacke, G. Friemel, N. Leps, S. Wurmehl, N. Wizent, C. Hess, R. Klingeler, G. Behr, B. Büchner and S. Singh, Single crystal growth and physical
properties of superconducting ferro-pnictides Ba(Fe, Co)2As2 grown using self-
flux and Bridgman techniques, Journal of Crystal Growth, 2010 (in press).*
10. Shah H. Khan, George Matei, S.Patil and Peter M. Hoffmann, Dynamic Solidification of nanoconfined water film, Physical Review Lett., 2010,105,
106101- 106104.*

11. S. G. Srivatsan, A. A. Sawant, Pure Appl. Chem., 2010, 83, doi:10.1351/PAC-
12. S. Ananth, LC(2) formulation of supergravity, Journal of High Energy Physics (JHEP) 2010, 1002:001.*
13. S. Ananth, Gravity and Yang-Mills theory, to appear in a special edition of the International Journal of Modern Physics D, December 2010.*
14. A. Sengupta, P. Hazra, Solvation Dynamics of Coumarin 153 in SDS Dispersed Single Walled Carbon Nanotubes, Chemical Physics Letter, 2010, (Article In
Press).*
15. M.M. Watve, N. Dahanukar, M.G. Watve, Sociobiological control of plasmid copy number in bacteria, PLoS One, 2010, 5, e9328.*
16. S. Pande, A. Pawashe, N. Sant, A. Mahabal, N. Dahanukar, Metropolitan garbage dumps: possible winter migratory raptor monitoring stations in
peninsular India, Journal of Threatened Taxa, 2010, 2, 1214-1218.*
17. M, Ayan, The discrete logarithm problem in the group of non-singular circulant matrices, Groups Complexity Cryptology 2(2010), 83-89.
18. S. Y. Hong, G. L. Borchert, A. E. Maciag, R. S. Nandurdikar, J. E. Saavedra, L. K. Keefer, J. M. Phang, H. Chakrapani, The Nitric Oxide Prodrug V-PROLI/NO
Inhibits Cellular Uptake of Proline ACS Medicinal Chemistry Letters, 2010,1,
386–389.*
19. V. Kumar, S. Y. Hong, A. E. Maciag, J. E. Saavedra, D. Adamson, R. Prud'homme, L. K. Keefer, H. Chakrapani, H., Stabilization of the Nitric Oxide
(NO) Prodrugs and Anti-Cancer Leads, PABA/NO and Double JS-K through
Incorporation into PEG-Protected Nanoparticles Molecular Pharmaceutics 2010,
7, 291-298.*
20. R. S. Nandurdikar, A. E. Maciag, S. Y. Hong, H. Chakrapani, M. L. Citro, L. K. Keefer, J. E. Saavedra, Glycosylated PROLI/NO Derivatives as Nitric Oxide
Prodrugs Organic Letters, 2010, 12, 56–59.*
21. Suvankar Dutta, V Suneeta, Classical and Quantum Gravity, 2010 (in press).
22. P. Ghosh and R. Gebauer, Computational Approaches to Charge Transfer Excitations in a ZnTPP-C70 complex, J. Chem. Phys., 2010, 132, 104102.
23. P. Borghetti, A. Goldoni, C. Castellarin-Cudia, L. Casalis, F. Herberg, L. Floreano, A. Cossaro, A. Verdini, R. Gebauer, P. Ghosh, L. Sangaletti, Langmuir
2010 (accepted for publication).
24. A. Bhattacharyay, Volume exclusion and elasticity-driven directional transport: a model inspired by bacterium motility, J. Phys. A: Math. Theor. 2010, 43, 315003*
25. A. Bhattacharyay, Exploring modulated amplitudes in the resistive regime of a one-dimensional superconductor, Eur. Phys. J. B 2010, 77 109-113.*
26. A. Bandyopadhyay, N. Agrawal, S. M. Mali, S. J. Jadhav, H. N. Gopi, Tin(II) Chloride Assisted Synthesis of N-protected γ- amino β-keto esters through
Semipinacol Rearrangement, Org. Biomol. Chem, 2010, 8, 4855-4860.*
27. G. V. Pavan Kumar, Near field optical properties of silver nanocylinders arranged in Pascals triangle, Applied Optics, 2010 (in press)*
28. G. V. Pavan Kumar, Gold nanoparticle-coated biomaterial as SERS micro- probes; Bull. Mat. Sci. (rapid comm.) 2010 (in press)*
29. G. V. Pavan Kumar, Book chapter: "Raman Scattering" in A textbook of Nanoscience and Nanotechnology, MacGraw Hill, 2010, in press*
30. Fishler T, Li YY, Wang R H, Kim HS, Sengupta K, Vassilopoulos A, Lahusen T, Xu X, Lee M H, Liu Q, Elledge S J, Ried T, Deng CX. Genetic instability and
mammary tumor formation in mice carrying mammary-specific disruption of Chk1
and p53. Oncogene. 2010, 29, 4007-17.
31. M.A. Upadhya, M. Dandekar, D.M. Kokare, P.S. Singru, N. K Subhedar, Evidence for the participation of cocaine- and amphetamine-regulated transcript
peptide (CART) in the fluoxetine-induced anti-hyperalgesia in neuropathic rats.
Peptides 2010, (Accepted for publication).*
32. K.T. Nakhate, D. M. Kokare, P.S. Singru, N.K. Subhedar. Central regulation of feeding behavior during social isolation of rat: evidence for the role of
endogenous CART system. International Journal of Obesity, 2010 (In Press)*
33. A.P. Bharne, M.A. Upadhya, D.M. Kokare, N.K. Subhedar, N.K. Effect of alpha- melanocyte stimulating hormone on locomotor recovery following spinal cord
injury in mice: Role of serotonergic system. Neuropeptides (2010)
doi:10.1016/j.npep.2010.10.001*
34. K.T. Nakhate, D. M. Kokare, P.S. Singru, A.G. Taksande, S.D. Kotwal, N.K. Subhedar. Effect of chemically-induced mammary carcinogenesis on the
hypothalamic cocaine- and amphetamine-regulated transcript peptide in rats.
Pharmacology, Biochemistry and Behavior 97 (2010) 340–349.*
35. V. Barsagade, M. Mazumdar, P. S. Singru, L. Thim, J. T. Clausen, N. K. Subhedar, Reproductive phase-related variations in cocaine- and amphetamine-regulated
transcript (CART) in the olfactory system, forebrain and pituitary of the female
catfish, Clarias batrachus (Linn.). Journal of Comparative Neurology (2010)
518:2503-2524.*
36. D. M. Kokare, M. Dandekar, P.S. Singru, G. Gupta, N.K. Subhedar. Involvement of α-MSH in the social isolation induced anxiety- and depression-like behaviors
in rat. Neuropharmacology (2010) 58:1009-1018.*
37. Gitali Devi and K.N.Ganesh, 1,4-linked 1,2,3-Triazole des-peptidic analogues of PNA (TzNA): Synthesis of TzNA oligomers by “click” reaction on solid phase and
stabilization of derived triplexes with DNA, Art DNA, PNA:XNA, 2010 (in press).*
38. Nagendra K. Sharma and Krishna N. Ganesh, Base dependent pyrrolidine ring pucker in aep-PNA monomers: NMR and PSEUROT analysis. Tetrahedron 2010
(in press).*
39. Nagendra K. Sharma and Krishna N. Ganesh, Enhanced stability of G- Tetraplexes from Conformationally Constrained aep-PNA backbone, Organic
Biomolecular Chemistry, 2010 (in press).*
40. V.B.Raman and K.N.Ganesh, 8-Substituted Adeninyl Peptide Nucleic Acid (PNA): In-situ, On-resin Synthesis of 8-Br/NH2 Adeninyl PNA oligomers and their
Complementation Studies with DNA, Tetrahedron Lett, 2010 (in press).*

41. A. K. Bhattacharya, T. Kaur, K. N. Ganesh, Synthesis, 2010, 1141-1144.*
42. Mahesh V. Sonar and Krishna N. Ganesh, Switching structures by H-bond
rearrangement: Transformation of β-structure in poly-4S-Aminoproline to PPII
conformation, Org. Lett, 2010 (in press)*
43. Roopa Mitra and Krishna Ganesh, PNAs grafted with (α/γ, R/S)-aminomethylene pendants: Regio- and stereospecific effects on DNA binding and improved cell
uptake, Chemical Communications, 2010 (in press).*
44. Amit N. Patwa, Rajesh G. Gonnade, Vaijayanti A. Kumar, Mohan M. Bhadbhade, Krishna N. Ganesh, Ferrocene – bis(thymine/uracil) conjugates: Base pairing
directed, spacer dependent self assembly and supramolecular packing, J. Org.
Chem, 2010 (in press).*
45. R. R. Lucchese, R. Montuoro, K. Kotsis, M. Tashiro, M. Ehara, John D. Bozek, Aloke Das, A. Landry, J. D. Rathbone, E. D. Poliakoff, “The effect of vibrational motion on the dynamics of shape resonant photoionization of BF3 leading to the E 2A / 1 state of BF3 ”, Mol. Phys., 2010, 108, 1055-1067.*
46. Jayani R S, Praveena L R and Galande S. Studying Histone modifications and their genomic functions by employing chromatin immunoprecipitation and
immunoblotting. Methods in Cell Biology, 2010, 98, 35-56.
47. Reddy C N L, Vyjayanti V N, Notani D, Galande S* and Kotamraju S*. Down- regulation of the global regulator SATB1 by statins in COLO205 colon cancer
cells. Molecular Medicine Reports 2010, (In Press).
48. Vempati RK*, Jayani RS*, Notani D, Sengupta A, Galande S and Haldar D. p300 mediated acetylation of histone H3 lysine 56 functions in DNA damage response
in mammals. J Biol Chem. 2010; 285, 28553-28564.
49. Ahlfors H, Limaye A, Elo LL, Tuomela S, Burute M, Gottimukkala, K, Notani D, Rasool O, Galande S* and Lahesmaa R*. SATB1 dictates expression of multiple
genes including IL-5 involved in human T helper cell differentiation. Blood 2010,
116,1443-1453.
50. Usha, N. and Shashidhara, L.S. Interaction between Ataxin-2 Binding Protein 1 and Cubitus-interruptus during wing development in Drosophila. Developmental
Biology, 2010, 341, 389-99.*
51. Gurudatta, B.V., Shashidhara, L.S. and Parnaik., V.K. Lamin C and chromatin organization in Drosophila. J. Genetics, 2010, 89, 37-49.*
52. Berger, C., Ramakrishnan, K., Myneni, S., Renner, S., Shashidhara, L.S. and Technau, G.M. Cell cycle independent role of Cyclin E during neural cell fate
specification in Drosophila is mediated by its regulation of Prospero function.
Developmental Biology, 2010, 337, 415–424.*
53. Ramakrishnan, K., Berger, C., Myneni, S., Technau, G.M. and Shashidhara, L.S. Abdominal-A mediated repression of Cyclin E expression during cell-fate
specification in the Drosophila central nervous system, Mechanism of
Development 2010, 127, 137-145.*
54. Maity, S. and Maitra, S. Minimum distance between bent and 1-resilient Boolean functions. Ars Combinatoria, 2010, 97, 351-375.

55. Maity, S., Arackaparambil, Chrisil., and Meyase, Kezhasono. 2009. A new
construction of resilient Boolean functions with high nonlinearity, Ars
Combinatoria 2010 (in press).
56. K P Harikrishnan, R. Mishra, G. Ambika, R E Amritkar, Parametric characterisation of a chaotic attractor using two scale Cantor measure, Physica
D, 2010, 239, 420-427.*
57. V Resmi, G Ambika; R E Amritkar, Synchronized states in chaotic systems coupled indirectly through a dynamic environment, Phys Rev E, 2010, 81,
046216.*
58. K P Harikrishnan, R Mishra, G Ambika, Nonlinear time series analysis of the light curves from the black hole system GRS 1915+105 Research in Astronomy &
Astrophysics, 2010 (in press).*
59. Athale C. A. Modelling the Spatial Pattern Forming Modules in Mitotic Spindle Assembly, in “Understanding the Dynamics of Biological Systems: Lessons
from Integrative Systems Biology, (Springer, Eds. W. Dubitzky, J. Southgate and
H. Fuss) 2011.
60. Janies, D. A., Treseder, T., Alexandrov, B., Habib, F., Chen, J. J., Ferreira, R., Çatalyürek, Ü., Varón, A. and Wheeler, W. C. , The Supramap project: linking
pathogen genomes with geography to fight emergent infectious diseases.
Cladistics, 2010, no. doi: 10.1111/j.1096-0031.2010.00314.x
61. Mahima, G.; Jayakannan, M. Supramolecular Liquid Crystalline p-Conjugates: The Role of Aromatic p-stacking and van der Waals Forces on the Molecular
Self-assembly of Oligo-Phenylenevinylenes, J. Phys. Chem. B. 2010, 114,
12508-12519 (Appear as cover page).*
62. Shekhar, S.; Jayakannan, M.; Probing the Molecular Interactions at Conducting Polyaniline Nanomaterial Surface via a Pyrene Fluorophore, J. Phys. Chem. C.
2010, 114, 15491-15498.*
63. Jinish Antony, M.; Jayakannan, M. Molecular Template Approach for Evolution of Conducting Polymer Nanostructures: Tracing the Role of Morphology on
Conductivity and Solid State Ordering. J. Phys. Chem. B. 2010, 114, 1314-
1324.*
64. Anilkumar, P.; Jayakannan, M. A Novel Supramolecular Organogel Nanotubular Template Approach for Conducting Nanomaterials. J. Phys. Chem. B. 2010,
114, 728- 736.*
65. N. Balasubramanian*, J.A. Meier, D.W. Scott, A. Norambuena, M.A. White, M.A. Schwartz. RalA-exocyst complex regulates integrin-dependent membrane raft
exocytosis and growth signaling. Curr Biol. 2010, 12;20(1):75-9.

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